WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38C1AB.4a.1 Sequence Name  Y38C1AB.4a.1
Length (nt)  4565   Chromosome Location  IV: 695-15330
Chromosome . Primary Identifier  IV Chromosome Location . Start  695
Chromosome Location . End  15330 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38C1AB.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021406 frm-5.2 Y38C1AB.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38C1AB.4a Y38C1AB.4a 4161   IV: 695-1065

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y38C1AB.4a.1 695 15330 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109871   371   IV: 695-1065 Caenorhabditis elegans
Exon109872   223   IV: 1279-1501 Caenorhabditis elegans
Exon109876   603   IV: 1625-2227 Caenorhabditis elegans
Exon109880   76   IV: 2698-2773 Caenorhabditis elegans
Exon109884   137   IV: 4909-5045 Caenorhabditis elegans
Exon109888   75   IV: 5146-5220 Caenorhabditis elegans
Exon109892   323   IV: 5462-5784 Caenorhabditis elegans
Exon109896   445   IV: 6259-6703 Caenorhabditis elegans
Exon109900   42   IV: 6994-7035 Caenorhabditis elegans
Exon109902   143   IV: 7312-7454 Caenorhabditis elegans
Exon109906   152   IV: 7705-7856 Caenorhabditis elegans
Exon109910   180   IV: 7951-8130 Caenorhabditis elegans
Exon109914   197   IV: 8352-8548 Caenorhabditis elegans
Exon109923   154   IV: 11268-11421 Caenorhabditis elegans
Exon109927   329   IV: 12469-12797 Caenorhabditis elegans
Exon109931   159   IV: 13185-13343 Caenorhabditis elegans
Exon109935   331   IV: 13704-14034 Caenorhabditis elegans
Exon109939   625   IV: 14706-15330 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y38C1AB.4a.1 695 15330 1

1 Sequence

Length
4565

1 Sequence Ontology Term

Identifier Name Description
transcript