WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38C1AB.4d.1 Sequence Name  Y38C1AB.4d.1
Length (nt)  4655   Chromosome Location  IV: 641-15414
Chromosome . Primary Identifier  IV Chromosome Location . Start  641
Chromosome Location . End  15414 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38C1AB.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021406 frm-5.2 Y38C1AB.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38C1AB.4d Y38C1AB.4d 4113   IV: 695-1065

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AB.4d.1 641 15414 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109917   425   IV: 641-1065 Caenorhabditis elegans
Exon109924   217   IV: 1285-1501 Caenorhabditis elegans
Exon109928   603   IV: 1625-2227 Caenorhabditis elegans
Exon109932   76   IV: 2698-2773 Caenorhabditis elegans
Exon109936   137   IV: 4909-5045 Caenorhabditis elegans
Exon109940   75   IV: 5146-5220 Caenorhabditis elegans
Exon109944   323   IV: 5462-5784 Caenorhabditis elegans
Exon109948   445   IV: 6259-6703 Caenorhabditis elegans
Exon109954   143   IV: 7312-7454 Caenorhabditis elegans
Exon109958   152   IV: 7705-7856 Caenorhabditis elegans
Exon109962   180   IV: 7951-8130 Caenorhabditis elegans
Exon109966   197   IV: 8352-8548 Caenorhabditis elegans
Exon109975   154   IV: 11268-11421 Caenorhabditis elegans
Exon109979   329   IV: 12469-12797 Caenorhabditis elegans
Exon109983   159   IV: 13185-13343 Caenorhabditis elegans
Exon109987   331   IV: 13704-14034 Caenorhabditis elegans
Exon109989   709   IV: 14706-15414 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AB.4d.1 641 15414 1

1 Sequence

Length
4655

1 Sequence Ontology Term

Identifier Name Description
transcript