WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38C1AB.6.1 Sequence Name  Y38C1AB.6.1
Length (nt)  2373   Chromosome Location  IV: 15499-20899
Chromosome . Primary Identifier  IV Chromosome Location . Start  15499
Chromosome Location . End  20899 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38C1AB.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021408 trpl-4 Y38C1AB.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38C1AB.6 Y38C1AB.6 2373   IV: 15499-16165

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AB.6.1 15499 20899 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109943   667   IV: 15499-16165 Caenorhabditis elegans
Exon109944   72   IV: 17735-17806 Caenorhabditis elegans
Exon109945   265   IV: 17852-18116 Caenorhabditis elegans
Exon109946   79   IV: 18164-18242 Caenorhabditis elegans
Exon109947   303   IV: 18538-18840 Caenorhabditis elegans
Exon109948   177   IV: 19204-19380 Caenorhabditis elegans
Exon109949   84   IV: 19551-19634 Caenorhabditis elegans
Exon109950   214   IV: 19912-20125 Caenorhabditis elegans
Exon109951   153   IV: 20172-20324 Caenorhabditis elegans
Exon109952   115   IV: 20446-20560 Caenorhabditis elegans
Exon109953   94   IV: 20607-20700 Caenorhabditis elegans
Exon109954   150   IV: 20750-20899 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AB.6.1 15499 20899 -1

1 Sequence

Length
2373

1 Sequence Ontology Term

Identifier Name Description
transcript