WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38C1AB.8d.1 Sequence Name  Y38C1AB.8d.1
Length (nt)  5152   Chromosome Location  IV: 32463-48844
Chromosome . Primary Identifier  IV Chromosome Location . Start  32463
Chromosome Location . End  48844 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38C1AB.8d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001492 frm-5.1 Y38C1AB.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38C1AB.8d Y38C1AB.8d 4662   IV: 32953-33173

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y38C1AB.8d.1 32463 48844 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109982   711   IV: 32463-33173 Caenorhabditis elegans
Exon109990   331   IV: 33845-34175 Caenorhabditis elegans
Exon109996   159   IV: 34536-34694 Caenorhabditis elegans
Exon110002   329   IV: 35082-35410 Caenorhabditis elegans
Exon110008   154   IV: 36458-36611 Caenorhabditis elegans
Exon110019   197   IV: 39331-39527 Caenorhabditis elegans
Exon110025   180   IV: 39749-39928 Caenorhabditis elegans
Exon110031   152   IV: 40023-40174 Caenorhabditis elegans
Exon110037   143   IV: 40425-40567 Caenorhabditis elegans
Exon110046   445   IV: 41176-41620 Caenorhabditis elegans
Exon110053   323   IV: 42095-42417 Caenorhabditis elegans
Exon110059   75   IV: 42659-42733 Caenorhabditis elegans
Exon110067   137   IV: 42834-42970 Caenorhabditis elegans
Exon110071   76   IV: 45106-45181 Caenorhabditis elegans
Exon110075   603   IV: 45652-46254 Caenorhabditis elegans
Exon110079   223   IV: 46378-46600 Caenorhabditis elegans
Exon110083   422   IV: 46814-47235 Caenorhabditis elegans
Exon110087   82   IV: 47791-47872 Caenorhabditis elegans
Exon110091   227   IV: 48276-48502 Caenorhabditis elegans
Exon110095   135   IV: 48559-48693 Caenorhabditis elegans
Exon110097   48   IV: 48797-48844 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y38C1AB.8d.1 32463 48844 -1

1 Sequence

Length
5152

1 Sequence Ontology Term

Identifier Name Description
transcript