WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38C1AB.8b.1 Sequence Name  Y38C1AB.8b.1
Length (nt)  5223   Chromosome Location  IV: 32464-48880
Chromosome . Primary Identifier  IV Chromosome Location . Start  32464
Chromosome Location . End  48880 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38C1AB.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001492 frm-5.1 Y38C1AB.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38C1AB.8b Y38C1AB.8b 4698   IV: 32953-33173

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y38C1AB.8b.1 32464 48880 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110002   710   IV: 32464-33173 Caenorhabditis elegans
Exon110007   331   IV: 33845-34175 Caenorhabditis elegans
Exon110013   159   IV: 34536-34694 Caenorhabditis elegans
Exon110019   329   IV: 35082-35410 Caenorhabditis elegans
Exon110025   154   IV: 36458-36611 Caenorhabditis elegans
Exon110036   197   IV: 39331-39527 Caenorhabditis elegans
Exon110042   180   IV: 39749-39928 Caenorhabditis elegans
Exon110048   152   IV: 40023-40174 Caenorhabditis elegans
Exon110054   143   IV: 40425-40567 Caenorhabditis elegans
Exon110059   42   IV: 40844-40885 Caenorhabditis elegans
Exon110063   445   IV: 41176-41620 Caenorhabditis elegans
Exon110070   323   IV: 42095-42417 Caenorhabditis elegans
Exon110076   75   IV: 42659-42733 Caenorhabditis elegans
Exon110084   137   IV: 42834-42970 Caenorhabditis elegans
Exon110088   76   IV: 45106-45181 Caenorhabditis elegans
Exon110092   603   IV: 45652-46254 Caenorhabditis elegans
Exon110096   217   IV: 46378-46594 Caenorhabditis elegans
Exon110100   422   IV: 46814-47235 Caenorhabditis elegans
Exon110104   82   IV: 47791-47872 Caenorhabditis elegans
Exon110108   227   IV: 48276-48502 Caenorhabditis elegans
Exon110112   135   IV: 48559-48693 Caenorhabditis elegans
Exon110118   84   IV: 48797-48880 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y38C1AB.8b.1 32464 48880 -1

1 Sequence

Length
5223

1 Sequence Ontology Term

Identifier Name Description
transcript