WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38C1AB.8f.1 Sequence Name  Y38C1AB.8f.1
Length (nt)  2727   Chromosome Location  IV: 32953-42851
Chromosome . Primary Identifier  IV Chromosome Location . Start  32953
Chromosome Location . End  42851 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38C1AB.8f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001492 frm-5.1 Y38C1AB.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38C1AB.8f Y38C1AB.8f 2727   IV: 32953-33173

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AB.8f.1 32953 42851 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109985   221   IV: 32953-33173 Caenorhabditis elegans
Exon109992   331   IV: 33845-34175 Caenorhabditis elegans
Exon109998   159   IV: 34536-34694 Caenorhabditis elegans
Exon110004   329   IV: 35082-35410 Caenorhabditis elegans
Exon110010   154   IV: 36458-36611 Caenorhabditis elegans
Exon110021   197   IV: 39331-39527 Caenorhabditis elegans
Exon110027   180   IV: 39749-39928 Caenorhabditis elegans
Exon110033   152   IV: 40023-40174 Caenorhabditis elegans
Exon110039   143   IV: 40425-40567 Caenorhabditis elegans
Exon110048   445   IV: 41176-41620 Caenorhabditis elegans
Exon110055   323   IV: 42095-42417 Caenorhabditis elegans
Exon110061   75   IV: 42659-42733 Caenorhabditis elegans
Exon110063   18   IV: 42834-42851 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AB.8f.1 32953 42851 -1

1 Sequence

Length
2727

1 Sequence Ontology Term

Identifier Name Description
transcript