WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0545.1a.1 Sequence Name  B0545.1a.1
Length (nt)  2855   Chromosome Location  IV: 91980-110819
Chromosome . Primary Identifier  IV Chromosome Location . Start  91980
Chromosome Location . End  110819 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0545.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006599 tpa-1 B0545.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0545.1a B0545.1a 2115   IV: 92052-92077

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0545.1a.1 91980 110819 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110126   98   IV: 91980-92077 Caenorhabditis elegans
Exon110130   107   IV: 92804-92910 Caenorhabditis elegans
Exon110132   146   IV: 93685-93830 Caenorhabditis elegans
Exon110135   103   IV: 98788-98890 Caenorhabditis elegans
Exon110139   75   IV: 103933-104007 Caenorhabditis elegans
Exon110142   221   IV: 104051-104271 Caenorhabditis elegans
Exon110146   130   IV: 105006-105135 Caenorhabditis elegans
Exon110150   530   IV: 105652-106181 Caenorhabditis elegans
Exon110154   155   IV: 107229-107383 Caenorhabditis elegans
Exon110158   472   IV: 107816-108287 Caenorhabditis elegans
Exon110166   818   IV: 110002-110819 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0545.1a.1 91980 110819 1

1 Sequence

Length
2855

1 Sequence Ontology Term

Identifier Name Description
transcript