WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0545.1b.1 Sequence Name  B0545.1b.1
Length (nt)  2816   Chromosome Location  IV: 91980-110750
Chromosome . Primary Identifier  IV Chromosome Location . Start  91980
Chromosome Location . End  110750 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0545.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006599 tpa-1 B0545.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0545.1b B0545.1b 1704   IV: 103962-104007

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0545.1b.1 91980 110750 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110127   98   IV: 91980-92077 Caenorhabditis elegans
Exon110128   30   IV: 92622-92651 Caenorhabditis elegans
Exon110131   107   IV: 92804-92910 Caenorhabditis elegans
Exon110133   146   IV: 93685-93830 Caenorhabditis elegans
Exon110136   103   IV: 98788-98890 Caenorhabditis elegans
Exon110140   75   IV: 103933-104007 Caenorhabditis elegans
Exon110143   221   IV: 104051-104271 Caenorhabditis elegans
Exon110147   130   IV: 105006-105135 Caenorhabditis elegans
Exon110151   530   IV: 105652-106181 Caenorhabditis elegans
Exon110155   155   IV: 107229-107383 Caenorhabditis elegans
Exon110159   472   IV: 107816-108287 Caenorhabditis elegans
Exon110164   749   IV: 110002-110750 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0545.1b.1 91980 110750 1

1 Sequence

Length
2816

1 Sequence Ontology Term

Identifier Name Description
transcript