WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0545.1b.2 Sequence Name  B0545.1b.2
Length (nt)  2090   Chromosome Location  IV: 92803-110151
Chromosome . Primary Identifier  IV Chromosome Location . Start  92803
Chromosome Location . End  110151 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0545.1b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006599 tpa-1 B0545.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0545.1b B0545.1b 1704   IV: 103962-104007

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0545.1b.2 92803 110151 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110129   108   IV: 92803-92910 Caenorhabditis elegans
Exon110134   146   IV: 93685-93830 Caenorhabditis elegans
Exon110137   103   IV: 98788-98890 Caenorhabditis elegans
Exon110141   75   IV: 103933-104007 Caenorhabditis elegans
Exon110144   221   IV: 104051-104271 Caenorhabditis elegans
Exon110148   130   IV: 105006-105135 Caenorhabditis elegans
Exon110152   530   IV: 105652-106181 Caenorhabditis elegans
Exon110156   155   IV: 107229-107383 Caenorhabditis elegans
Exon110160   472   IV: 107816-108287 Caenorhabditis elegans
Exon110163   150   IV: 110002-110151 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0545.1b.2 92803 110151 1

1 Sequence

Length
2090

1 Sequence Ontology Term

Identifier Name Description
transcript