WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0545.1b.1 Sequence Name  B0545.1b.1
Length (nt)  2816   Chromosome Location  IV: 91980-110750
Chromosome . Primary Identifier  IV Chromosome Location . Start  91980
Chromosome Location . End  110750 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0545.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006599 tpa-1 B0545.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0545.1b B0545.1b 1704   IV: 103962-104007

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0545.1b.1 91980 110750 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110176   98   IV: 91980-92077 Caenorhabditis elegans
Exon110177   30   IV: 92622-92651 Caenorhabditis elegans
Exon110180   107   IV: 92804-92910 Caenorhabditis elegans
Exon110182   146   IV: 93685-93830 Caenorhabditis elegans
Exon110185   103   IV: 98788-98890 Caenorhabditis elegans
Exon110189   75   IV: 103933-104007 Caenorhabditis elegans
Exon110192   221   IV: 104051-104271 Caenorhabditis elegans
Exon110196   130   IV: 105006-105135 Caenorhabditis elegans
Exon110200   530   IV: 105652-106181 Caenorhabditis elegans
Exon110204   155   IV: 107229-107383 Caenorhabditis elegans
Exon110208   472   IV: 107816-108287 Caenorhabditis elegans
Exon110213   749   IV: 110002-110750 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0545.1b.1 91980 110750 1

1 Sequence

Length
2816

1 Sequence Ontology Term

Identifier Name Description
transcript