WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F29C4.8k.1 Sequence Name  F29C4.8k.1
Length (nt)  2172   Chromosome Location  IV: 138699-147919
Chromosome . Primary Identifier  IV Chromosome Location . Start  138699
Chromosome Location . End  147919 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F29C4.8k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000674 col-99 F29C4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F29C4.8k F29C4.8k 2172   IV: 138699-138855

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F29C4.8k.1 138699 147919 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110268   157   IV: 138699-138855 Caenorhabditis elegans
Exon110283   23   IV: 139236-139258 Caenorhabditis elegans
Exon110300   162   IV: 139335-139496 Caenorhabditis elegans
Exon110313   45   IV: 139551-139595 Caenorhabditis elegans
Exon110326   183   IV: 139730-139912 Caenorhabditis elegans
Exon110343   117   IV: 139954-140070 Caenorhabditis elegans
Exon110360   159   IV: 140142-140300 Caenorhabditis elegans
Exon110373   72   IV: 140379-140450 Caenorhabditis elegans
Exon110386   156   IV: 140543-140698 Caenorhabditis elegans
Exon110403   177   IV: 140805-140981 Caenorhabditis elegans
Exon110420   351   IV: 141068-141418 Caenorhabditis elegans
Exon110446   36   IV: 142260-142295 Caenorhabditis elegans
Exon110463   108   IV: 142441-142548 Caenorhabditis elegans
Exon110480   57   IV: 142602-142658 Caenorhabditis elegans
Exon110498   35   IV: 143757-143791 Caenorhabditis elegans
Exon110517   91   IV: 144796-144886 Caenorhabditis elegans
Exon110535   243   IV: 147677-147919 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F29C4.8k.1 138699 147919 -1

1 Sequence

Length
2172

1 Sequence Ontology Term

Identifier Name Description
transcript