WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38C1AA.5b.1 Sequence Name  Y38C1AA.5b.1
Length (nt)  1945   Chromosome Location  IV: 165141-169967
Chromosome . Primary Identifier  IV Chromosome Location . Start  165141
Chromosome Location . End  169967 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38C1AA.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021396 cutl-24 Y38C1AA.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38C1AA.5b Y38C1AA.5b 1806   IV: 165177-165261

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AA.5b.1 165141 169967 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110508   121   IV: 165141-165261 Caenorhabditis elegans
Exon110510   203   IV: 165831-166033 Caenorhabditis elegans
Exon110512   110   IV: 166520-166629 Caenorhabditis elegans
Exon110514   118   IV: 166676-166793 Caenorhabditis elegans
Exon110516   700   IV: 167642-168341 Caenorhabditis elegans
Exon110518   84   IV: 168389-168472 Caenorhabditis elegans
Exon110520   88   IV: 168519-168606 Caenorhabditis elegans
Exon110522   278   IV: 168944-169221 Caenorhabditis elegans
Exon110523   243   IV: 169725-169967 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AA.5b.1 165141 169967 1

1 Sequence

Length
1945

1 Sequence Ontology Term

Identifier Name Description
transcript