WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T21D12.9c.1 Sequence Name  T21D12.9c.1
Length (nt)  2870   Chromosome Location  IV: 274589-279938
Chromosome . Primary Identifier  IV Chromosome Location . Start  274589
Chromosome Location . End  279938 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21D12.9c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020649 sma-10 T21D12.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21D12.9c T21D12.9c 2214   IV: 274626-274867

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T21D12.9c.1 274589 279938 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110757   279   IV: 274589-274867 Caenorhabditis elegans
Exon110762   72   IV: 275116-275187 Caenorhabditis elegans
Exon110765   75   IV: 275541-275615 Caenorhabditis elegans
Exon110768   138   IV: 275661-275798 Caenorhabditis elegans
Exon110771   144   IV: 275843-275986 Caenorhabditis elegans
Exon110774   216   IV: 276045-276260 Caenorhabditis elegans
Exon110777   213   IV: 276385-276597 Caenorhabditis elegans
Exon110780   228   IV: 276650-276877 Caenorhabditis elegans
Exon110783   505   IV: 276925-277429 Caenorhabditis elegans
Exon110786   286   IV: 277842-278127 Caenorhabditis elegans
Exon110787   361   IV: 278178-278538 Caenorhabditis elegans
Exon110792   133   IV: 279526-279658 Caenorhabditis elegans
Exon110793   220   IV: 279719-279938 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T21D12.9c.1 274589 279938 1

1 Sequence

Length
2870

1 Sequence Ontology Term

Identifier Name Description
transcript