WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F18F11.3g.1 Sequence Name  F18F11.3g.1
Length (nt)  4815   Chromosome Location  IV: 339808-358882
Chromosome . Primary Identifier  IV Chromosome Location . Start  339808
Chromosome Location . End  358882 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F18F11.3g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017576 cdh-8 F18F11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F18F11.3g F18F11.3g 4815   IV: 339808-339868

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F18F11.3g.1 339808 358882 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon110855   61   IV: 339808-339868 Caenorhabditis elegans
Exon110862   101   IV: 340335-340435 Caenorhabditis elegans
Exon110870   93   IV: 341136-341228 Caenorhabditis elegans
Exon110879   87   IV: 345173-345259 Caenorhabditis elegans
Exon110887   153   IV: 345645-345797 Caenorhabditis elegans
Exon110895   92   IV: 345847-345938 Caenorhabditis elegans
Exon110903   108   IV: 345985-346092 Caenorhabditis elegans
Exon110911   322   IV: 346822-347143 Caenorhabditis elegans
Exon110919   108   IV: 347195-347302 Caenorhabditis elegans
Exon110927   129   IV: 348814-348942 Caenorhabditis elegans
Exon110935   325   IV: 350578-350902 Caenorhabditis elegans
Exon110943   125   IV: 351591-351715 Caenorhabditis elegans
Exon110951   222   IV: 351761-351982 Caenorhabditis elegans
Exon110959   372   IV: 352778-353149 Caenorhabditis elegans
Exon110967   365   IV: 353962-354326 Caenorhabditis elegans
Exon110979   171   IV: 354656-354826 Caenorhabditis elegans
Exon110987   601   IV: 354870-355470 Caenorhabditis elegans
Exon110991   93   IV: 355802-355894 Caenorhabditis elegans
Exon110999   93   IV: 355936-356028 Caenorhabditis elegans
Exon111007   210   IV: 356285-356494 Caenorhabditis elegans
Exon111015   255   IV: 356545-356799 Caenorhabditis elegans
Exon111019   144   IV: 357352-357495 Caenorhabditis elegans
Exon111027   89   IV: 357541-357629 Caenorhabditis elegans
Exon111036   241   IV: 357731-357971 Caenorhabditis elegans
Exon111045   149   IV: 358550-358698 Caenorhabditis elegans
Exon111053   106   IV: 358777-358882 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F18F11.3g.1 339808 358882 1

1 Sequence

Length
4815

1 Sequence Ontology Term

Identifier Name Description
transcript