WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y66H1B.2g.1 Sequence Name  Y66H1B.2g.1
Length (nt)  6965   Chromosome Location  IV: 359240-376012
Chromosome . Primary Identifier  IV Chromosome Location . Start  359240
Chromosome Location . End  376012 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y66H1B.2g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022048 fln-1 Y66H1B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y66H1B.2g Y66H1B.2g 6621   IV: 359584-359619

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1B.2g.1 359240 376012 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon111111   380   IV: 359240-359619 Caenorhabditis elegans
Exon111126   228   IV: 359994-360221 Caenorhabditis elegans
Exon111143   161   IV: 360805-360965 Caenorhabditis elegans
Exon111160   254   IV: 361011-361264 Caenorhabditis elegans
Exon111177   533   IV: 361326-361858 Caenorhabditis elegans
Exon111194   852   IV: 361907-362758 Caenorhabditis elegans
Exon111211   395   IV: 362837-363231 Caenorhabditis elegans
Exon111234   109   IV: 363771-363879 Caenorhabditis elegans
Exon111252   99   IV: 364209-364307 Caenorhabditis elegans
Exon111268   581   IV: 367129-367709 Caenorhabditis elegans
Exon111284   186   IV: 367761-367946 Caenorhabditis elegans
Exon111300   159   IV: 368242-368400 Caenorhabditis elegans
Exon111316   172   IV: 368599-368770 Caenorhabditis elegans
Exon111332   329   IV: 368820-369148 Caenorhabditis elegans
Exon111350   100   IV: 371406-371505 Caenorhabditis elegans
Exon111367   555   IV: 371573-372127 Caenorhabditis elegans
Exon111384   536   IV: 372808-373343 Caenorhabditis elegans
Exon111402   277   IV: 373644-373920 Caenorhabditis elegans
Exon111419   563   IV: 373962-374524 Caenorhabditis elegans
Exon111444   174   IV: 374571-374744 Caenorhabditis elegans
Exon111453   172   IV: 375594-375765 Caenorhabditis elegans
Exon111462   114   IV: 375814-375927 Caenorhabditis elegans
Exon111471   36   IV: 375977-376012 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1B.2g.1 359240 376012 -1

1 Sequence

Length
6965

1 Sequence Ontology Term

Identifier Name Description
transcript