WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y66H1B.2k.1 Sequence Name  Y66H1B.2k.1
Length (nt)  6627   Chromosome Location  IV: 359584-376012
Chromosome . Primary Identifier  IV Chromosome Location . Start  359584
Chromosome Location . End  376012 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y66H1B.2k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022048 fln-1 Y66H1B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y66H1B.2k Y66H1B.2k 6627   IV: 359584-359619

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1B.2k.1 359584 376012 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon111073   36   IV: 359584-359619 Caenorhabditis elegans
Exon111081   228   IV: 359994-360221 Caenorhabditis elegans
Exon111098   161   IV: 360805-360965 Caenorhabditis elegans
Exon111115   254   IV: 361011-361264 Caenorhabditis elegans
Exon111132   533   IV: 361326-361858 Caenorhabditis elegans
Exon111149   852   IV: 361907-362758 Caenorhabditis elegans
Exon111166   395   IV: 362837-363231 Caenorhabditis elegans
Exon111187   109   IV: 363771-363879 Caenorhabditis elegans
Exon111207   99   IV: 364209-364307 Caenorhabditis elegans
Exon111223   581   IV: 367129-367709 Caenorhabditis elegans
Exon111239   186   IV: 367761-367946 Caenorhabditis elegans
Exon111255   159   IV: 368242-368400 Caenorhabditis elegans
Exon111271   172   IV: 368599-368770 Caenorhabditis elegans
Exon111287   329   IV: 368820-369148 Caenorhabditis elegans
Exon111305   100   IV: 371406-371505 Caenorhabditis elegans
Exon111322   555   IV: 371573-372127 Caenorhabditis elegans
Exon111339   536   IV: 372808-373343 Caenorhabditis elegans
Exon111357   277   IV: 373644-373920 Caenorhabditis elegans
Exon111378   569   IV: 373962-374530 Caenorhabditis elegans
Exon111399   174   IV: 374571-374744 Caenorhabditis elegans
Exon111408   172   IV: 375594-375765 Caenorhabditis elegans
Exon111417   114   IV: 375814-375927 Caenorhabditis elegans
Exon111425   36   IV: 375977-376012 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1B.2k.1 359584 376012 -1

1 Sequence

Length
6627

1 Sequence Ontology Term

Identifier Name Description
transcript