WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y66H1B.4.1 Sequence Name  Y66H1B.4.1
Length (nt)  1798   Chromosome Location  IV: 379885-383185
Chromosome . Primary Identifier  IV Chromosome Location . Start  379885
Chromosome Location . End  383185 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y66H1B.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004981 spl-1 Y66H1B.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y66H1B.4 Y66H1B.4 1659   IV: 380018-380249

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1B.4.1 379885 383185 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon111428   365   IV: 379885-380249 Caenorhabditis elegans
Exon111429   265   IV: 380301-380565 Caenorhabditis elegans
Exon111430   121   IV: 380615-380735 Caenorhabditis elegans
Exon111431   147   IV: 380785-380931 Caenorhabditis elegans
Exon111432   244   IV: 381133-381376 Caenorhabditis elegans
Exon111433   179   IV: 381424-381602 Caenorhabditis elegans
Exon111434   149   IV: 382557-382705 Caenorhabditis elegans
Exon111435   137   IV: 382756-382892 Caenorhabditis elegans
Exon111436   111   IV: 382941-383051 Caenorhabditis elegans
Exon111437   80   IV: 383106-383185 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1B.4.1 379885 383185 -1

1 Sequence

Length
1798

1 Sequence Ontology Term

Identifier Name Description
transcript