WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T07A9.3.2 Sequence Name  T07A9.3.2
Length (nt)  1620   Chromosome Location  IV: 405622-410035
Chromosome . Primary Identifier  IV Chromosome Location . Start  405622
Chromosome Location . End  410035 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07A9.3.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002187 kgb-1 T07A9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07A9.3 T07A9.3 1173   IV: 405948-406091

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T07A9.3.2 405622 410035 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon111554   470   IV: 405622-406091 Caenorhabditis elegans
Exon111556   107   IV: 406150-406256 Caenorhabditis elegans
Exon111559   261   IV: 406303-406563 Caenorhabditis elegans
Exon111562   172   IV: 406733-406904 Caenorhabditis elegans
Exon111565   85   IV: 406954-407038 Caenorhabditis elegans
Exon111568   116   IV: 407747-407862 Caenorhabditis elegans
Exon111571   130   IV: 407906-408035 Caenorhabditis elegans
Exon111574   92   IV: 408686-408777 Caenorhabditis elegans
Exon111577   76   IV: 408821-408896 Caenorhabditis elegans
Exon111582   111   IV: 409925-410035 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T07A9.3.2 405622 410035 -1

1 Sequence

Length
1620

1 Sequence Ontology Term

Identifier Name Description
transcript