WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y66H1A.6c.1 Sequence Name  Y66H1A.6c.1
Length (nt)  3918   Chromosome Location  IV: 429209-440554
Chromosome . Primary Identifier  IV Chromosome Location . Start  429209
Chromosome Location . End  440554 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y66H1A.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002041 hum-8 Y66H1A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y66H1A.6c Y66H1A.6c 3840   IV: 429277-429398

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1A.6c.1 429209 440554 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon111648   190   IV: 429209-429398 Caenorhabditis elegans
Exon111651   360   IV: 430513-430872 Caenorhabditis elegans
Exon111654   293   IV: 430932-431224 Caenorhabditis elegans
Exon111656   302   IV: 432629-432930 Caenorhabditis elegans
Exon111658   149   IV: 432981-433129 Caenorhabditis elegans
Exon111660   112   IV: 433177-433288 Caenorhabditis elegans
Exon111662   448   IV: 434125-434572 Caenorhabditis elegans
Exon111664   164   IV: 435285-435448 Caenorhabditis elegans
Exon111666   486   IV: 436482-436967 Caenorhabditis elegans
Exon111668   369   IV: 437989-438357 Caenorhabditis elegans
Exon111670   165   IV: 438431-438595 Caenorhabditis elegans
Exon111672   98   IV: 438639-438736 Caenorhabditis elegans
Exon111674   295   IV: 438791-439085 Caenorhabditis elegans
Exon111676   275   IV: 439450-439724 Caenorhabditis elegans
Exon111678   212   IV: 440343-440554 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y66H1A.6c.1 429209 440554 -1

1 Sequence

Length
3918

1 Sequence Ontology Term

Identifier Name Description
transcript