WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3C.9a.1 Sequence Name  Y55F3C.9a.1
Length (nt)  2256   Chromosome Location  IV: 719766-727488
Chromosome . Primary Identifier  IV Chromosome Location . Start  719766
Chromosome Location . End  727488 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3C.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00044459 Y55F3C.9 Y55F3C.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3C.9a Y55F3C.9a 2199   IV: 719816-720254

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.9a.1 719766 727488 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112142   489   IV: 719766-720254 Caenorhabditis elegans
Exon112144   301   IV: 720328-720628 Caenorhabditis elegans
Exon112146   158   IV: 722919-723076 Caenorhabditis elegans
Exon112148   266   IV: 723128-723393 Caenorhabditis elegans
Exon112150   122   IV: 725030-725151 Caenorhabditis elegans
Exon112152   174   IV: 725202-725375 Caenorhabditis elegans
Exon112154   102   IV: 725419-725520 Caenorhabditis elegans
Exon112156   126   IV: 725570-725695 Caenorhabditis elegans
Exon112158   126   IV: 725744-725869 Caenorhabditis elegans
Exon112160   162   IV: 727051-727212 Caenorhabditis elegans
Exon112162   230   IV: 727259-727488 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.9a.1 719766 727488 -1

1 Sequence

Length
2256

1 Sequence Ontology Term

Identifier Name Description
transcript