WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3C.9b.1 Sequence Name  Y55F3C.9b.1
Length (nt)  2948   Chromosome Location  IV: 719777-728195
Chromosome . Primary Identifier  IV Chromosome Location . Start  719777
Chromosome Location . End  728195 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3C.9b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00044459 Y55F3C.9 Y55F3C.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3C.9b Y55F3C.9b 2121   IV: 719816-720254

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.9b.1 719777 728195 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112143   478   IV: 719777-720254 Caenorhabditis elegans
Exon112145   301   IV: 720328-720628 Caenorhabditis elegans
Exon112147   158   IV: 722919-723076 Caenorhabditis elegans
Exon112149   266   IV: 723128-723393 Caenorhabditis elegans
Exon112151   122   IV: 725030-725151 Caenorhabditis elegans
Exon112153   174   IV: 725202-725375 Caenorhabditis elegans
Exon112155   102   IV: 725419-725520 Caenorhabditis elegans
Exon112157   126   IV: 725570-725695 Caenorhabditis elegans
Exon112159   126   IV: 725744-725869 Caenorhabditis elegans
Exon112161   162   IV: 727051-727212 Caenorhabditis elegans
Exon112163   933   IV: 727263-728195 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.9b.1 719777 728195 -1

1 Sequence

Length
2948

1 Sequence Ontology Term

Identifier Name Description
transcript