WormMine: Gene WBGene00219763

• WormBase Gene ID: WBGene00219763
• Gene Name: linc-94
• Sequence Name: Y55F3C.16
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in GLR and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by dpy-21; camt-1; and etr-1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: IV :-23.5851±
• Length (nt): 543

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219763

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y55F3C.16	Y55F3C.16	484	IV: 735162-735704

Other

0 CDSs

0 RNAi Result

19 Allele

• gk963722
• gk963025
• gk963557
• gk963558
• gk192726
• gk192727
• WBVar01608341
• WBVar01608342
• WBVar01608340
• gk893267
• gk468817
• WBVar02045881
• WBVar02045880
• WBVar01984561
• gk680985
• gk478496
• gk878656
• gk685587
• gk478497

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219763
• Start: 735162
• End: 735704
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_735705..736528
• Length (nt): 824
• Chromosome Location: IV: 735705-736528
• Organism: Caenorhabditis elegans

13 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_upregulated_neural
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Transcripts that showed significantly increased expression in 10-days post L4 adult hermaphrodite N2 grown at 20C, comparing to in 1-day post L4 adult hermaphrodite N2 animals grown at 20C.	CuffDiff, fold change > 2.	WBPaper00065096:Day10_vs_Day1_upregulated
	Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage.	DESeq v1.6.3. Fold change > 1.5.	WBPaper00050370:dpy-21(e428)_L3_upregulated
	Single-cell RNA-Seq cell group 51_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:51_1
	Transcripts that showed significantly altered expression at RMG neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain.	RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis.	WBPaper00061902:camt-1(ok515)_regulated_RMG
	Single-cell RNA-Seq cell group 111_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:111_0
	Single-cell RNA-Seq cell group 23_0 expressed in mesoderm.	scVI 0.6.0	WBPaper00065841:23_0
	Single-cell RNA-Seq cell group 91_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:91_0
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA
	Single-cell RNA-Seq cell group 51_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:51_0
	Single-cell RNA-Seq cell group 90_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:90_0
	Single-cell RNA-Seq cell group 107_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:107_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219763
• Start: 735162
• End: 735704
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 543

1 Sequence Ontology Term