WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3C.3c.1 Sequence Name  Y55F3C.3c.1
Length (nt)  1803   Chromosome Location  IV: 736747-752928
Chromosome . Primary Identifier  IV Chromosome Location . Start  736747
Chromosome Location . End  752928 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3C.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021948 kvs-5 Y55F3C.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3C.3c Y55F3C.3c 1803   IV: 736747-736840

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3c.1 736747 752928 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112174   94   IV: 736747-736840 Caenorhabditis elegans
Exon112175   127   IV: 737997-738123 Caenorhabditis elegans
Exon112183   102   IV: 748813-748914 Caenorhabditis elegans
Exon112189   170   IV: 748969-749138 Caenorhabditis elegans
Exon112195   94   IV: 749514-749607 Caenorhabditis elegans
Exon112201   181   IV: 749791-749971 Caenorhabditis elegans
Exon112206   24   IV: 750037-750060 Caenorhabditis elegans
Exon112210   93   IV: 750200-750292 Caenorhabditis elegans
Exon112216   201   IV: 751088-751288 Caenorhabditis elegans
Exon112222   54   IV: 751381-751434 Caenorhabditis elegans
Exon112226   102   IV: 751583-751684 Caenorhabditis elegans
Exon112232   193   IV: 751872-752064 Caenorhabditis elegans
Exon112238   163   IV: 752115-752277 Caenorhabditis elegans
Exon112244   127   IV: 752679-752805 Caenorhabditis elegans
Exon112249   78   IV: 752851-752928 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3c.1 736747 752928 1

1 Sequence

Length
1803

1 Sequence Ontology Term

Identifier Name Description
transcript