WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3C.3f.1 Sequence Name  Y55F3C.3f.1
Length (nt)  1864   Chromosome Location  IV: 748707-753232
Chromosome . Primary Identifier  IV Chromosome Location . Start  748707
Chromosome Location . End  753232 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3C.3f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021948 kvs-5 Y55F3C.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3C.3f Y55F3C.3f 1560   IV: 748707-748738

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3f.1 748707 753232 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112180   32   IV: 748707-748738 Caenorhabditis elegans
Exon112186   102   IV: 748813-748914 Caenorhabditis elegans
Exon112192   170   IV: 748969-749138 Caenorhabditis elegans
Exon112198   94   IV: 749514-749607 Caenorhabditis elegans
Exon112204   181   IV: 749791-749971 Caenorhabditis elegans
Exon112208   24   IV: 750037-750060 Caenorhabditis elegans
Exon112213   93   IV: 750200-750292 Caenorhabditis elegans
Exon112219   201   IV: 751088-751288 Caenorhabditis elegans
Exon112229   102   IV: 751583-751684 Caenorhabditis elegans
Exon112235   193   IV: 751872-752064 Caenorhabditis elegans
Exon112241   163   IV: 752115-752277 Caenorhabditis elegans
Exon112247   127   IV: 752679-752805 Caenorhabditis elegans
Exon112252   382   IV: 752851-753232 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3f.1 748707 753232 1

1 Sequence

Length
1864

1 Sequence Ontology Term

Identifier Name Description
transcript