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Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. |
DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. |
WBPaper00060811:L1_vs_adult_upregulated_neural
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Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. |
DESEQ2, fold change > 2 and FDR < 0.01. |
WBPaper00062103:neuron_enriched
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Transcripts that showed significantly increased expression in 10-days post L4 adult hermaphrodite N2 grown at 20C, comparing to in 1-day post L4 adult hermaphrodite N2 animals grown at 20C. |
CuffDiff, fold change > 2. |
WBPaper00065096:Day10_vs_Day1_upregulated
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Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. |
DESeq v1.6.3. Fold change > 1.5. |
WBPaper00050370:dpy-21(e428)_L3_upregulated
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Transcripts that showed significantly increased expression in N2 day 15 adults comparing to in N2 day 1 adult animals according to Illumina RNASeq. |
DESeq fold change > 2, FDR < 0.05. |
WBPaper00067499:Day15_vs_Day1_upregulated_Illumina
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Single-cell RNA-Seq cell group 51_1 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:51_1
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Transcripts that showed significantly altered expression at RMG neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain. |
RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. |
WBPaper00061902:camt-1(ok515)_regulated_RMG
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Diet: supplemented with milk fat-containing protein powder from L1 to day 2 adult stage. |
Transcripts that showed significantly decreased expression in N2 animals fed with OP50 supplemented with milk fat-containing protein powder from L1 to day 2 adult stage. |
Differential expression analysis between two conditions (three biological replicates per condition) was performed using DESeq2. Genes with p-value < 0.05 and Fold Change > 2 found by DESeq2 were assigned as differentially expressed. |
WBPaper00067530:Milk-protein_downregulated
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Transcripts that showed significantly increased expression in day 8 oocytes isolated from daf-2(e1370);control versus daf-2(e1370);bcat-1(RNAi)animals. |
DESeq2, fold change > 2, FDR < 0.05 |
WBPaper00066547:bcat-1(RNAi)_downregulated_transcript
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Single-cell RNA-Seq cell group 111_0 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:111_0
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Single-cell RNA-Seq cell group 23_0 expressed in mesoderm. |
scVI 0.6.0 |
WBPaper00065841:23_0
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Single-cell RNA-Seq cell group 91_0 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:91_0
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Transcripts of noncoding genes that showed significantly decreased expression in muscle. |
DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. |
WBPaper00062325:muscle_depleted_noncoding-RNA
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Single-cell RNA-Seq cell group 51_0 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:51_0
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Single-cell RNA-Seq cell group 90_0 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:90_0
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Single-cell RNA-Seq cell group 107_0 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:107_0
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