WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y55F3C.3a Sequence Name  Y55F3C.3a
Length (nt)  1566   Chromosome Location  IV: 742310-742317
Chromosome . Primary Identifier  IV Chromosome Location . Start  742310
Chromosome Location . End  742317
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3C.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE29886 KVS-5, isoform a 59.5 521 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00002374
WBRNAi00057555
WBRNAi00021057

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
CDS:Y55F3C.3a 742310 742317 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021948 kvs-5 Y55F3C.3 Caenorhabditis elegans

13 Locations


Feature . Primary Identifier 		Start End Strand
CDS:Y55F3C.3a 742310 742317 1
CDS:Y55F3C.3a 748813 748914 1
CDS:Y55F3C.3a 748969 749138 1
CDS:Y55F3C.3a 749514 749607 1
CDS:Y55F3C.3a 749791 749971 1
CDS:Y55F3C.3a 750200 750292 1
CDS:Y55F3C.3a 751088 751288 1
CDS:Y55F3C.3a 751381 751434 1
CDS:Y55F3C.3a 751583 751684 1
CDS:Y55F3C.3a 751872 752064 1
CDS:Y55F3C.3a 752115 752277 1
CDS:Y55F3C.3a 752679 752805 1
CDS:Y55F3C.3a 752851 752928 1

1 Sequence

Length
1566

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y55F3C.3a.1 Y55F3C.3a.1 1954   IV: 742310-753316