WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3C.3e.1 Sequence Name  Y55F3C.3e.1
Length (nt)  1590   Chromosome Location  IV: 748707-752928
Chromosome . Primary Identifier  IV Chromosome Location . Start  748707
Chromosome Location . End  752928 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3C.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021948 kvs-5 Y55F3C.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3C.3e Y55F3C.3e 1590   IV: 748707-748738

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3e.1 748707 752928 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112228   32   IV: 748707-748738 Caenorhabditis elegans
Exon112234   102   IV: 748813-748914 Caenorhabditis elegans
Exon112240   170   IV: 748969-749138 Caenorhabditis elegans
Exon112246   94   IV: 749514-749607 Caenorhabditis elegans
Exon112252   181   IV: 749791-749971 Caenorhabditis elegans
Exon112261   93   IV: 750200-750292 Caenorhabditis elegans
Exon112267   201   IV: 751088-751288 Caenorhabditis elegans
Exon112273   54   IV: 751381-751434 Caenorhabditis elegans
Exon112277   102   IV: 751583-751684 Caenorhabditis elegans
Exon112283   193   IV: 751872-752064 Caenorhabditis elegans
Exon112289   163   IV: 752115-752277 Caenorhabditis elegans
Exon112295   127   IV: 752679-752805 Caenorhabditis elegans
Exon112300   78   IV: 752851-752928 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3e.1 748707 752928 1

1 Sequence

Length
1590

1 Sequence Ontology Term

Identifier Name Description
transcript