WormMine: Gene WBGene00201199

• WormBase Gene ID: WBGene00201199
• Gene Name: Y55F3BR.16
• Sequence Name: Y55F3BR.16
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by silicon dioxide nanoparticle based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 87

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00201199

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y55F3BR.16	Y55F3BR.16	87	IV: 842805-842891

Other

0 CDSs

0 RNAi Result

10 Allele

• gk963722
• gk963025
• gk963557
• gk963558
• gk964114
• gk964115
• gk192953
• WBVar01667646
• gk927630
• gk584521

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00201199
• Start: 842805
• End: 842891
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_842127..842804
• Length (nt): 678
• Chromosome Location: IV: 842127-842804
• Organism: Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in animals after 24 hour exposure to 100ug per ml silica nanoparticles (SiNPs).	The random variance model (RVM)t-test was applied toidentify differentially expressed mRNAs and miRNAsbetween the SiNPs-treated group and the control group. P-value <0.05 and fold change (FC) >1.5 were considered as the threshold screening between the SiNP-treated groupand the control group.	WBPaper00060100:SiNP_upregulated_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00201199
• Start: 842805
• End: 842891
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 87

1 Sequence Ontology Term