WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3BR.1.1 Sequence Name  Y55F3BR.1.1
Length (nt)  2453   Chromosome Location  IV: 874791-881910
Chromosome . Primary Identifier  IV Chromosome Location . Start  874791
Chromosome Location . End  881910 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3BR.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021938 Y55F3BR.1 Y55F3BR.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3BR.1 Y55F3BR.1 2187   IV: 874982-875049

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3BR.1.1 874791 881910 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112487   259   IV: 874791-875049 Caenorhabditis elegans
Exon112488   64   IV: 875128-875191 Caenorhabditis elegans
Exon112489   334   IV: 875239-875572 Caenorhabditis elegans
Exon112490   475   IV: 876882-877356 Caenorhabditis elegans
Exon112493   256   IV: 878255-878510 Caenorhabditis elegans
Exon112494   388   IV: 879478-879865 Caenorhabditis elegans
Exon112495   144   IV: 880456-880599 Caenorhabditis elegans
Exon112496   212   IV: 880967-881178 Caenorhabditis elegans
Exon112497   321   IV: 881590-881910 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3BR.1.1 874791 881910 1

1 Sequence

Length
2453

1 Sequence Ontology Term

Identifier Name Description
transcript