WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3BR.2b.1 Sequence Name  Y55F3BR.2b.1
Length (nt)  3771   Chromosome Location  IV: 862180-874529
Chromosome . Primary Identifier  IV Chromosome Location . Start  862180
Chromosome Location . End  874529 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3BR.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021939 Y55F3BR.2 Y55F3BR.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3BR.2b Y55F3BR.2b 3771   IV: 862180-862402

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3BR.2b.1 862180 874529 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112495   223   IV: 862180-862402 Caenorhabditis elegans
Exon112498   153   IV: 863222-863374 Caenorhabditis elegans
Exon112500   240   IV: 864027-864266 Caenorhabditis elegans
Exon112502   126   IV: 864934-865059 Caenorhabditis elegans
Exon112504   174   IV: 865734-865907 Caenorhabditis elegans
Exon112506   233   IV: 866063-866295 Caenorhabditis elegans
Exon112508   91   IV: 866540-866630 Caenorhabditis elegans
Exon112510   141   IV: 866684-866824 Caenorhabditis elegans
Exon112512   70   IV: 866874-866943 Caenorhabditis elegans
Exon112516   581   IV: 868662-869242 Caenorhabditis elegans
Exon112519   504   IV: 870182-870685 Caenorhabditis elegans
Exon112522   150   IV: 871564-871713 Caenorhabditis elegans
Exon112525   121   IV: 871831-871951 Caenorhabditis elegans
Exon112528   662   IV: 872494-873155 Caenorhabditis elegans
Exon112531   246   IV: 873857-874102 Caenorhabditis elegans
Exon112533   56   IV: 874474-874529 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3BR.2b.1 862180 874529 1

1 Sequence

Length
3771

1 Sequence Ontology Term

Identifier Name Description
transcript