WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3AL.1e.1 Sequence Name  Y55F3AL.1e.1
Length (nt)  3525   Chromosome Location  IV: 972383-983709
Chromosome . Primary Identifier  IV Chromosome Location . Start  972383
Chromosome Location . End  983709 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3AL.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004047 plx-1 Y55F3AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3AL.1e Y55F3AL.1e 3525   IV: 972383-972922

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3AL.1e.1 972383 983709 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112631   540   IV: 972383-972922 Caenorhabditis elegans
Exon112637   151   IV: 973764-973914 Caenorhabditis elegans
Exon112643   172   IV: 974470-974641 Caenorhabditis elegans
Exon112649   126   IV: 975269-975394 Caenorhabditis elegans
Exon112655   150   IV: 975450-975599 Caenorhabditis elegans
Exon112661   460   IV: 976199-976658 Caenorhabditis elegans
Exon112667   510   IV: 977242-977751 Caenorhabditis elegans
Exon112673   354   IV: 978858-979211 Caenorhabditis elegans
Exon112677   126   IV: 980654-980779 Caenorhabditis elegans
Exon112685   434   IV: 981560-981993 Caenorhabditis elegans
Exon112691   388   IV: 982729-983116 Caenorhabditis elegans
Exon112695   114   IV: 983596-983709 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3AL.1e.1 972383 983709 1

1 Sequence

Length
3525

1 Sequence Ontology Term

Identifier Name Description
transcript