WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3AL.1c.1 Sequence Name  Y55F3AL.1c.1
Length (nt)  5304   Chromosome Location  IV: 964323-983709
Chromosome . Primary Identifier  IV Chromosome Location . Start  964323
Chromosome Location . End  983709 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3AL.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004047 plx-1 Y55F3AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3AL.1c Y55F3AL.1c 5304   IV: 964323-964441

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y55F3AL.1c.1 964323 983709 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112642   119   IV: 964323-964441 Caenorhabditis elegans
Exon112646   246   IV: 965737-965982 Caenorhabditis elegans
Exon112650   266   IV: 967066-967331 Caenorhabditis elegans
Exon112654   137   IV: 967901-968037 Caenorhabditis elegans
Exon112658   317   IV: 968662-968978 Caenorhabditis elegans
Exon112662   254   IV: 969803-970056 Caenorhabditis elegans
Exon112666   182   IV: 971064-971245 Caenorhabditis elegans
Exon112670   108   IV: 971307-971414 Caenorhabditis elegans
Exon112674   107   IV: 971876-971982 Caenorhabditis elegans
Exon112678   550   IV: 972373-972922 Caenorhabditis elegans
Exon112684   151   IV: 973764-973914 Caenorhabditis elegans
Exon112690   172   IV: 974470-974641 Caenorhabditis elegans
Exon112696   126   IV: 975269-975394 Caenorhabditis elegans
Exon112702   150   IV: 975450-975599 Caenorhabditis elegans
Exon112708   460   IV: 976199-976658 Caenorhabditis elegans
Exon112714   510   IV: 977242-977751 Caenorhabditis elegans
Exon112720   354   IV: 978858-979211 Caenorhabditis elegans
Exon112728   159   IV: 980654-980812 Caenorhabditis elegans
Exon112732   434   IV: 981560-981993 Caenorhabditis elegans
Exon112738   388   IV: 982729-983116 Caenorhabditis elegans
Exon112742   114   IV: 983596-983709 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y55F3AL.1c.1 964323 983709 1

1 Sequence

Length
5304

1 Sequence Ontology Term

Identifier Name Description
transcript