WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3AL.1f.1 Sequence Name  Y55F3AL.1f.1
Length (nt)  3558   Chromosome Location  IV: 972383-983709
Chromosome . Primary Identifier  IV Chromosome Location . Start  972383
Chromosome Location . End  983709 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3AL.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004047 plx-1 Y55F3AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3AL.1f Y55F3AL.1f 3558   IV: 972383-972922

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3AL.1f.1 972383 983709 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112632   540   IV: 972383-972922 Caenorhabditis elegans
Exon112638   151   IV: 973764-973914 Caenorhabditis elegans
Exon112644   172   IV: 974470-974641 Caenorhabditis elegans
Exon112650   126   IV: 975269-975394 Caenorhabditis elegans
Exon112656   150   IV: 975450-975599 Caenorhabditis elegans
Exon112662   460   IV: 976199-976658 Caenorhabditis elegans
Exon112668   510   IV: 977242-977751 Caenorhabditis elegans
Exon112674   354   IV: 978858-979211 Caenorhabditis elegans
Exon112680   159   IV: 980654-980812 Caenorhabditis elegans
Exon112686   434   IV: 981560-981993 Caenorhabditis elegans
Exon112692   388   IV: 982729-983116 Caenorhabditis elegans
Exon112696   114   IV: 983596-983709 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3AL.1f.1 972383 983709 1

1 Sequence

Length
3558

1 Sequence Ontology Term

Identifier Name Description
transcript