WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3AL.1f.1 Sequence Name  Y55F3AL.1f.1
Length (nt)  3558   Chromosome Location  IV: 972383-983709
Chromosome . Primary Identifier  IV Chromosome Location . Start  972383
Chromosome Location . End  983709 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3AL.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004047 plx-1 Y55F3AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3AL.1f Y55F3AL.1f 3558   IV: 972383-972922

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3AL.1f.1 972383 983709 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112681   540   IV: 972383-972922 Caenorhabditis elegans
Exon112687   151   IV: 973764-973914 Caenorhabditis elegans
Exon112693   172   IV: 974470-974641 Caenorhabditis elegans
Exon112699   126   IV: 975269-975394 Caenorhabditis elegans
Exon112705   150   IV: 975450-975599 Caenorhabditis elegans
Exon112711   460   IV: 976199-976658 Caenorhabditis elegans
Exon112717   510   IV: 977242-977751 Caenorhabditis elegans
Exon112723   354   IV: 978858-979211 Caenorhabditis elegans
Exon112729   159   IV: 980654-980812 Caenorhabditis elegans
Exon112735   434   IV: 981560-981993 Caenorhabditis elegans
Exon112741   388   IV: 982729-983116 Caenorhabditis elegans
Exon112745   114   IV: 983596-983709 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3AL.1f.1 972383 983709 1

1 Sequence

Length
3558

1 Sequence Ontology Term

Identifier Name Description
transcript