WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00194825 Gene Name  mir-2209.2
Sequence Name  ? Y55F3AM.19 Organism  Caenorhabditis elegans
Automated Description  Is affected by multi-walled carbon nanotube based on RNA-seq studies. Biotype  SO:0001265
Genetic Position  IV :-22.6895 ±0.012617 Length (nt)  ? 63
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00194825

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y55F3AM.19b Y55F3AM.19b 22   IV: 1021303-1021324
Transcript:Y55F3AM.19a Y55F3AM.19a 22   IV: 1021344-1021365
 

Other

0 CDSs

0 RNAi Result

10 Allele

Public Name
gk963722
gk964482
gk963025
gk963557
gk963558
gk964114
gk964115
tm5484
tm5901
WBVar00568357

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00194825 1021303 1021365 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_1019559..1021302   1744 IV: 1019559-1021302 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  MicroRNAs that showed significantly increased expression after animals were exposed to 1 mg per liter multi-walled carbon nanotubes (MWCNTs) from L1 larva to young adult. DESeq, cut-off of 2-fold change. WBPaper00045019:MWCNT_upregulated
  Micro RNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine). DESeq2 v1.13.8, fold change > 2, FDR < 0.01. WBPaper00056161:male_enriched_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00194825 1021303 1021365 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
63

1 Sequence Ontology Term