WormMine: Gene WBGene00194826

• WormBase Gene ID: WBGene00194826
• Gene Name: mir-2209.3
• Sequence Name: Y55F3AM.20
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by alg-2 and alg-5 based on RNA-seq studies.
• Biotype: SO:0001265
• Genetic Position: IV :-22.5706 ±0.016328
• Length (nt): 64

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00194826

Genomics

2 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y55F3AM.20a	Y55F3AM.20a	23	IV: 1027218-1027240
Transcript:Y55F3AM.20b	Y55F3AM.20b	23	IV: 1027259-1027281

Other

0 CDSs

0 RNAi Result

9 Allele

• gk963722
• gk964482
• gk963025
• gk963557
• gk963558
• gk964114
• gk964115
• gk193300
• WBVar01510031

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00194826
• Start: 1027218
• End: 1027281
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_1027282..1027786
• Length (nt): 505
• Chromosome Location: IV: 1027282-1027786
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	MicroRNAs that showed significantly increased expression in Day 5 (5-days post-L4) vs. Day 0 (L4 larva) of adulthood mir-71(n4115) animals.	Differential expression for both small RNA- and mRNA-seq data was tested using DESeq2; P-values were adjusted for multiple testing by Benjamini-Hochberg method.	WBPaper00053318:Aging_upregulated_miRNA_mir-71(n4115)
	MicroRNAs that showed significantly increased expression in Day 5 (5-days post-L4) vs. Day 0 (L4 larva) of adulthood N2 animals.	Differential expression for both small RNA- and mRNA-seq data was tested using DESeq2; P-values were adjusted for multiple testing by Benjamini-Hochberg method.	WBPaper00053318:Aging_upregulated_miRNA_N2
	MicroRNAs that showed significantly increased expression in alg-2(ok304), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-2(ok304)_upregulated_miRNA
	MicroRNAs that showed significantly decreased expression in alg-5(tm1163), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-5(tm1163)_downregulated_miRNA
	Micro RNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine).	DESeq2 v1.13.8, fold change > 2, FDR < 0.01.	WBPaper00056161:male_enriched_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00194826
• Start: 1027218
• End: 1027281
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 64

1 Sequence Ontology Term