Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y55F3AM.22 | Y55F3AM.22 |
988
 |
IV: 1033999-1035986 |
Other
48 Allele
| Public Name |
|---|
| gk963722 |
| gk964482 |
| gk963025 |
| gk963557 |
| gk963558 |
| gk964114 |
| gk964115 |
| gk193315 |
| gk193314 |
| gk193313 |
| WBVar00183283 |
| WBVar01608731 |
| WBVar01608734 |
| WBVar01608732 |
| WBVar01608733 |
| gk727339 |
| gk586045 |
| WBVar01686882 |
| gk402295 |
| gk563578 |
| WBVar01686884 |
| WBVar01686883 |
| gk357862 |
| WBVar01686886 |
| WBVar01686885 |
| gk961821 |
| WBVar02079181 |
| gk845528 |
| WBVar01802483 |
| gk405122 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00219762 | 1033999 | 1035986 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrIV_1030040..1033998 | 3959 | IV: 1030040-1033998 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. | DESEQ2, fold change > 2 and FDR < 0.01. | WBPaper00062103:neuron_enriched | |
| Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. | DESeq2, FDR < 0.05, fold change > 2. | WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron | |
| Protein coding genes with decreased expression in prg-1(wm161) comparing to in N2. | Cuffdiff and DEGseq were used to calculate the differential expression of protein-coding genes with and without the prg-1 mutation, and authors selected genes which had more than two-fold difference in expression (P < 0.05, q < 0.01 of Storey) from DEGseq outcomes. The intersection of genes which authors selected from DEGseq outcomes and genes which had more than two-fold difference in expression (P < 0.05) from Cuffdiff outcomes was defined as differentially expressed genes. | WBPaper00045316:prg-1_downregulated_L2 |