WormMine: Gene WBGene00219437

• WormBase Gene ID: WBGene00219437
• Gene Name: C50A2.7
• Sequence Name: C50A2.7
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AWBL and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by smn-1 and cat-2 based on RNA-seq studies. Is predicted to encode a protein with the following domains: PAN-3 domain and PAN-like domain.
• Biotype: SO:0001217
• Genetic Position: :±
• Length (nt): 1321

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219437

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C50A2.7.1	C50A2.7.1	429	IV: 1163426-1164746

Other

1 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:C50A2.7	C50A2.7	429	IV: 1163426-1163539

0 RNAi Result

57 Allele

• gk963722
• gk964482
• gk963025
• tm11413
• gk193576
• gk193575
• gk193579
• gk193578
• gk193577
• WBVar00183489
• WBVar01831454
• WBVar01831453
• WBVar01825615
• WBVar01825614
• WBVar01686996
• WBVar01686995
• WBVar01920826
• WBVar01920827
• WBVar02103353
• WBVar02103352
• WBVar01510488
• WBVar01510489
• WBVar01510486
• WBVar01510487
• WBVar02019625
• WBVar01510492
• WBVar01510493
• WBVar02019624
• WBVar01510490
• WBVar01510491

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219437
• Start: 1163426
• End: 1164746
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_1164747..1170707
• Length (nt): 5961
• Chromosome Location: IV: 1164747-1170707
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Transcripts that showed significantly increased expression in smn-1(ok355) heterozygots using balancer hT2 comparing to in N2.	DESeq v1.14.0, log2FC > 1, q <= 0.05.	WBPaper00056809:smn-1(ok355)_upregulated
	Transcripts that showed significantly decreased expression in Day 8 adults comparing to in Day 1 adults in neuron cells.	t-test, fold change > 2, p-value < 0.01.	WBPaper00062590:Aging_downregulated_neuron
	Single-cell RNA-Seq cell group 101_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:101_0
	Transcripts that showed significantly increased expression in cat-2(e1112);odIs77 comparing to in odIs77 control animals.	EdgeR, FDR<0.01	WBPaper00060921:cat-2(e1112)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219437
• Start: 1163426
• End: 1164746
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1321

1 Sequence Ontology Term