WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00045037 Gene Name  F38A1.17
Sequence Name  ? F38A1.17 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1; adr-1; and daf-2 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 313
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00045037

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

31 Allele

Public Name
gk963722
gk964482
gk963025
gk193792
WBVar02124576
tm11428
WBVar00183546
WBVar02097886
WBVar02124012
WBVar02123629
WBVar02123760
WBVar02124788
gk536301
WBVar02077072
gk359704
WBVar00091093
WBVar01802734
WBVar01802733
WBVar02121988
otn6580
WBVar02122826
WBVar02076414
WBVar01510766
WBVar01510767
WBVar02122577
WBVar02122386
WBVar02121427
WBVar01920888
WBVar02123802
WBVar02121759

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00045037 1260207 1260519 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_1259345..1260206   862 IV: 1259345-1260206 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00045037 1260207 1260519 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
313

1 Sequence Ontology Term