WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53H1.1a.1 Sequence Name  F53H1.1a.1
Length (nt)  3097   Chromosome Location  IV: 1297222-1309650
Chromosome . Primary Identifier  IV Chromosome Location . Start  1297222
Chromosome Location . End  1309650 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53H1.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018776 ddx-46 F53H1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53H1.1a F53H1.1a 2913   IV: 1297400-1297447

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.1a.1 1297222 1309650 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon113214   226   IV: 1297222-1297447 Caenorhabditis elegans
Exon113219   299   IV: 1297586-1297884 Caenorhabditis elegans
Exon113223   370   IV: 1298985-1299354 Caenorhabditis elegans
Exon113225   218   IV: 1300556-1300773 Caenorhabditis elegans
Exon113229   160   IV: 1301935-1302094 Caenorhabditis elegans
Exon113233   276   IV: 1303064-1303339 Caenorhabditis elegans
Exon113237   120   IV: 1303411-1303530 Caenorhabditis elegans
Exon113241   201   IV: 1304386-1304586 Caenorhabditis elegans
Exon113245   411   IV: 1305954-1306364 Caenorhabditis elegans
Exon113247   554   IV: 1307909-1308462 Caenorhabditis elegans
Exon113254   262   IV: 1309389-1309650 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.1a.1 1297222 1309650 -1

1 Sequence

Length
3097

1 Sequence Ontology Term

Identifier Name Description
transcript