WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53H1.4a.1 Sequence Name  F53H1.4a.1
Length (nt)  4472   Chromosome Location  IV: 1310166-1328243
Chromosome . Primary Identifier  IV Chromosome Location . Start  1310166
Chromosome Location . End  1328243 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53H1.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018778 F53H1.4 F53H1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53H1.4a F53H1.4a 3828   IV: 1310224-1310294

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.4a.1 1310166 1328243 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon113304   129   IV: 1310166-1310294 Caenorhabditis elegans
Exon113305   62   IV: 1310598-1310659 Caenorhabditis elegans
Exon113307   57   IV: 1310742-1310798 Caenorhabditis elegans
Exon113309   181   IV: 1310897-1311077 Caenorhabditis elegans
Exon113311   274   IV: 1312127-1312400 Caenorhabditis elegans
Exon113313   396   IV: 1313021-1313416 Caenorhabditis elegans
Exon113315   237   IV: 1315287-1315523 Caenorhabditis elegans
Exon113317   252   IV: 1316880-1317131 Caenorhabditis elegans
Exon113319   510   IV: 1318078-1318587 Caenorhabditis elegans
Exon113321   291   IV: 1320135-1320425 Caenorhabditis elegans
Exon113323   104   IV: 1321063-1321166 Caenorhabditis elegans
Exon113325   281   IV: 1322092-1322372 Caenorhabditis elegans
Exon113327   279   IV: 1323186-1323464 Caenorhabditis elegans
Exon113329   554   IV: 1324948-1325501 Caenorhabditis elegans
Exon113332   865   IV: 1327379-1328243 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.4a.1 1310166 1328243 1

1 Sequence

Length
4472

1 Sequence Ontology Term

Identifier Name Description
transcript