WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53H1.3a.1 Sequence Name  F53H1.3a.1
Length (nt)  1814   Chromosome Location  IV: 1329162-1339376
Chromosome . Primary Identifier  IV Chromosome Location . Start  1329162
Chromosome Location . End  1339376 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53H1.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018777 F53H1.3 F53H1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53H1.3a F53H1.3a 1665   IV: 1329163-1329258

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.3a.1 1329162 1339376 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon113333   97   IV: 1329162-1329258 Caenorhabditis elegans
Exon113334   122   IV: 1329445-1329566 Caenorhabditis elegans
Exon113335   145   IV: 1329859-1330003 Caenorhabditis elegans
Exon113336   106   IV: 1331457-1331562 Caenorhabditis elegans
Exon113337   140   IV: 1331617-1331756 Caenorhabditis elegans
Exon113338   266   IV: 1332846-1333111 Caenorhabditis elegans
Exon113339   123   IV: 1334340-1334462 Caenorhabditis elegans
Exon113340   124   IV: 1335188-1335311 Caenorhabditis elegans
Exon113341   117   IV: 1335374-1335490 Caenorhabditis elegans
Exon113345   103   IV: 1338382-1338484 Caenorhabditis elegans
Exon113346   120   IV: 1338850-1338969 Caenorhabditis elegans
Exon113349   351   IV: 1339026-1339376 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.3a.1 1329162 1339376 1

1 Sequence

Length
1814

1 Sequence Ontology Term

Identifier Name Description
transcript