WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023304 Gene Name  F58F6.t1
Sequence Name  ? F58F6.t1 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 and mrps-5 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 73
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023304

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

10 Allele

Public Name
gk963722
gk964482
gk963025
gk193928
WBVar02124963
WBVar01668268
WBVar01510955
gk667157
gk646739
WBVar01852942

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023304 1355414 1355486 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_1355306..1355413   108 IV: 1355306-1355413 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated
  Transcripts that showed significantly decreased expression in mrps-5(RNAi) animals comparing to animals injected with empty vector. Differential expression was assessed using a Partial least-squares discriminant analysis (PLS-DA) using mixomics setting a variable of importance (VIP) score of greater than 1 as significant. WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023304 1355414 1355486 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
73

1 Sequence Ontology Term