WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y77E11A.1a.3 Sequence Name  Y77E11A.1a.3
Length (nt)  1797   Chromosome Location  IV: 1497626-1510027
Chromosome . Primary Identifier  IV Chromosome Location . Start  1497626
Chromosome Location . End  1510027 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y77E11A.1a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022306 hxk-3 Y77E11A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y77E11A.1a Y77E11A.1a 1356   IV: 1499876-1500053

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y77E11A.1a.3 1497626 1510027 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon113516   75   IV: 1497626-1497700 Caenorhabditis elegans
Exon113520   192   IV: 1499862-1500053 Caenorhabditis elegans
Exon113524   146   IV: 1500839-1500984 Caenorhabditis elegans
Exon113527   76   IV: 1502171-1502246 Caenorhabditis elegans
Exon113530   140   IV: 1502311-1502450 Caenorhabditis elegans
Exon113533   110   IV: 1503411-1503520 Caenorhabditis elegans
Exon113537   118   IV: 1506105-1506222 Caenorhabditis elegans
Exon113542   74   IV: 1506352-1506425 Caenorhabditis elegans
Exon113547   75   IV: 1506944-1507018 Caenorhabditis elegans
Exon113552   81   IV: 1507251-1507331 Caenorhabditis elegans
Exon113557   140   IV: 1508217-1508356 Caenorhabditis elegans
Exon113563   137   IV: 1509309-1509445 Caenorhabditis elegans
Exon113570   433   IV: 1509595-1510027 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y77E11A.1a.3 1497626 1510027 1

1 Sequence

Length
1797

1 Sequence Ontology Term

Identifier Name Description
transcript