WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y77E11A.1a.1 Sequence Name  Y77E11A.1a.1
Length (nt)  1657   Chromosome Location  IV: 1499862-1509962
Chromosome . Primary Identifier  IV Chromosome Location . Start  1499862
Chromosome Location . End  1509962 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y77E11A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022306 hxk-3 Y77E11A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y77E11A.1a Y77E11A.1a 1356   IV: 1499876-1500053

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y77E11A.1a.1 1499862 1509962 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon113521   192   IV: 1499862-1500053 Caenorhabditis elegans
Exon113522   146   IV: 1500839-1500984 Caenorhabditis elegans
Exon113525   76   IV: 1502171-1502246 Caenorhabditis elegans
Exon113528   140   IV: 1502311-1502450 Caenorhabditis elegans
Exon113531   110   IV: 1503411-1503520 Caenorhabditis elegans
Exon113535   118   IV: 1506105-1506222 Caenorhabditis elegans
Exon113540   74   IV: 1506352-1506425 Caenorhabditis elegans
Exon113545   75   IV: 1506944-1507018 Caenorhabditis elegans
Exon113550   81   IV: 1507251-1507331 Caenorhabditis elegans
Exon113555   140   IV: 1508217-1508356 Caenorhabditis elegans
Exon113561   137   IV: 1509309-1509445 Caenorhabditis elegans
Exon113568   368   IV: 1509595-1509962 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y77E11A.1a.1 1499862 1509962 1

1 Sequence

Length
1657

1 Sequence Ontology Term

Identifier Name Description
transcript