WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41D4B.19b.1 Sequence Name  Y41D4B.19b.1
Length (nt)  4435   Chromosome Location  IV: 1567921-1595824
Chromosome . Primary Identifier  IV Chromosome Location . Start  1567921
Chromosome Location . End  1595824 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41D4B.19b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003794 npp-8 Y41D4B.19 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41D4B.19b Y41D4B.19b 4023   IV: 1568314-1568455

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y41D4B.19b.1 1567921 1595824 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon113696   535   IV: 1567921-1568455 Caenorhabditis elegans
Exon113698   388   IV: 1569471-1569858 Caenorhabditis elegans
Exon113703   353   IV: 1572113-1572465 Caenorhabditis elegans
Exon113706   330   IV: 1574714-1575043 Caenorhabditis elegans
Exon113710   583   IV: 1580423-1581005 Caenorhabditis elegans
Exon113711   324   IV: 1582941-1583264 Caenorhabditis elegans
Exon113712   470   IV: 1584354-1584823 Caenorhabditis elegans
Exon113713   211   IV: 1585675-1585885 Caenorhabditis elegans
Exon113715   130   IV: 1590908-1591037 Caenorhabditis elegans
Exon113717   558   IV: 1593397-1593954 Caenorhabditis elegans
Exon113719   202   IV: 1595167-1595368 Caenorhabditis elegans
Exon113721   97   IV: 1595415-1595511 Caenorhabditis elegans
Exon113723   254   IV: 1595571-1595824 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y41D4B.19b.1 1567921 1595824 -1

1 Sequence

Length
4435

1 Sequence Ontology Term

Identifier Name Description
transcript