WormMine: Gene WBGene00003297

• WormBase Gene ID: WBGene00003297
• Gene Name: Y41D4B.25
• Sequence Name: Y41D4B.25
• Brief Description: Y41D4B.25 was published as a microRNA but is now classified as an endogenous siRNA; Y41D4B.25 appears to be expressed in the L3 and L4 larval stages and in adults in normal worms and in the glp-4(bn2) mutant worm; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of Y41D4B.25 is not known.
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by daf-12 based on tiling array studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 21

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00003297

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y41D4B.25	Y41D4B.25	21	IV: 1646921-1646941

Other

0 CDSs

0 RNAi Result

4 Allele

• gk963722
• gk964482
• gk963025
• WBVar02077259

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00003297
• Start: 1646921
• End: 1646941
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_1645299..1646920
• Length (nt): 1622
• Chromosome Location: IV: 1645299-1646920
• Organism: Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Potental DAF-12 target genes identified by ChIP-chip analysis performed on strain ALF4 [daf-12	Affymetrix TAS software that computed for each probe estimates of fold enrichment (in linear scale) over hybridization with input DNA. At the same time, TAS calculated for each probe a p-value by applying a Wilcoxon signed rank test. A threshold of 2.5 was selected, which corresponds to probe intensities approximately 2.5 times stronger on the ChIP array than on the Input array. Additional TAS threshold parameters were MinRun=180 bp, MaxGap=300 bp. TAS analysis showed that the selected threshold of 2.5 corresponds approximately to a p-value of 0.01.	WBPaper00040221:DAF-12_target_ALF4

1 Expression Patterns

• Primary Identifier: Expr1667
• Pattern: Expressed in L3, L4 and adults.

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00003297
• Start: 1646921
• End: 1646941
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 21

1 Sequence Ontology Term