WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55A8.2b.1 Sequence Name  F55A8.2b.1
Length (nt)  2214   Chromosome Location  IV: 1849665-1879939
Chromosome . Primary Identifier  IV Chromosome Location . Start  1849665
Chromosome Location . End  1879939 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55A8.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001173 egl-4 F55A8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55A8.2b F55A8.2b 2214   IV: 1849665-1849691

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55A8.2b.1 1849665 1879939 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114063   27   IV: 1849665-1849691 Caenorhabditis elegans
Exon114068   168   IV: 1860836-1861003 Caenorhabditis elegans
Exon114074   236   IV: 1862683-1862918 Caenorhabditis elegans
Exon114080   167   IV: 1864120-1864286 Caenorhabditis elegans
Exon114086   97   IV: 1865373-1865469 Caenorhabditis elegans
Exon114093   124   IV: 1871764-1871887 Caenorhabditis elegans
Exon114102   108   IV: 1873585-1873692 Caenorhabditis elegans
Exon114112   557   IV: 1875651-1876207 Caenorhabditis elegans
Exon114119   634   IV: 1877187-1877820 Caenorhabditis elegans
Exon114125   96   IV: 1879844-1879939 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55A8.2b.1 1849665 1879939 1

1 Sequence

Length
2214

1 Sequence Ontology Term

Identifier Name Description
transcript