WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52C12.4e.1 Sequence Name  F52C12.4e.1
Length (nt)  4764   Chromosome Location  IV: 1924001-1947477
Chromosome . Primary Identifier  IV Chromosome Location . Start  1924001
Chromosome Location . End  1947477 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C12.4e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018681 denn-4 F52C12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C12.4e F52C12.4e 4596   IV: 1924008-1924077

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F52C12.4e.1 1924001 1947477 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114160   77   IV: 1924001-1924077 Caenorhabditis elegans
Exon114172   125   IV: 1924567-1924691 Caenorhabditis elegans
Exon114180   237   IV: 1926013-1926249 Caenorhabditis elegans
Exon114188   387   IV: 1927651-1928037 Caenorhabditis elegans
Exon114196   150   IV: 1929167-1929316 Caenorhabditis elegans
Exon114206   150   IV: 1929372-1929521 Caenorhabditis elegans
Exon114212   212   IV: 1930862-1931073 Caenorhabditis elegans
Exon114221   373   IV: 1933690-1934062 Caenorhabditis elegans
Exon114229   179   IV: 1934121-1934299 Caenorhabditis elegans
Exon114237   155   IV: 1935330-1935484 Caenorhabditis elegans
Exon114245   62   IV: 1935543-1935604 Caenorhabditis elegans
Exon114257   69   IV: 1937425-1937493 Caenorhabditis elegans
Exon114265   91   IV: 1938109-1938199 Caenorhabditis elegans
Exon114273   92   IV: 1939097-1939188 Caenorhabditis elegans
Exon114281   252   IV: 1939240-1939491 Caenorhabditis elegans
Exon114289   574   IV: 1940241-1940814 Caenorhabditis elegans
Exon114297   393   IV: 1942437-1942829 Caenorhabditis elegans
Exon114305   317   IV: 1943589-1943905 Caenorhabditis elegans
Exon114313   179   IV: 1944766-1944944 Caenorhabditis elegans
Exon114321   339   IV: 1945831-1946169 Caenorhabditis elegans
Exon114330   351   IV: 1947127-1947477 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F52C12.4e.1 1924001 1947477 1

1 Sequence

Length
4764

1 Sequence Ontology Term

Identifier Name Description
transcript