WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52C12.3.1 Sequence Name  F52C12.3.1
Length (nt)  1231   Chromosome Location  IV: 1948191-1953317
Chromosome . Primary Identifier  IV Chromosome Location . Start  1948191
Chromosome Location . End  1953317 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C12.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018680 tsen-54 F52C12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C12.3 F52C12.3 1008   IV: 1948198-1948226

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52C12.3.1 1948191 1953317 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114333   36   IV: 1948191-1948226 Caenorhabditis elegans
Exon114334   151   IV: 1948797-1948947 Caenorhabditis elegans
Exon114335   149   IV: 1949089-1949237 Caenorhabditis elegans
Exon114336   182   IV: 1949529-1949710 Caenorhabditis elegans
Exon114337   89   IV: 1952387-1952475 Caenorhabditis elegans
Exon114338   137   IV: 1952545-1952681 Caenorhabditis elegans
Exon114339   135   IV: 1952736-1952870 Caenorhabditis elegans
Exon114340   352   IV: 1952966-1953317 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52C12.3.1 1948191 1953317 1

1 Sequence

Length
1231

1 Sequence Ontology Term

Identifier Name Description
transcript